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Sample GSM1260862 Query DataSets for GSM1260862
Status Public on Nov 08, 2013
Title pHTE63p1
Sample type RNA
 
Source name Human tracheal epithelial cells
Organism Homo sapiens
Characteristics developmental stage: adult
tissue: trachea
cell type: epithelia
Treatment protocol No treatment
Growth protocol Growth conditions as described in Davis PB, Silski CL, Kercsmar CM, et al. Beta-adrenergic receptors on human tracheal epithelial cells in primary culture. Am J Physiol 1990;258:C71–6.
Extracted molecule total RNA
Extraction protocol RNA was isolated by Trizol extraction from two primary cultures of HTE (human tracheal epithelial) cells. Total RNA was purified by Millipore Microcon YM-100 filter centrifugation.
Label Cy3
Label protocol Labeling was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
Scan protocol Scanning was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
Description Expression values for human genes in HTE cells
Data processing Data were processed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
 
Submission date Nov 07, 2013
Last update date Nov 08, 2013
Contact name Ann Harris
Organization name Lurie Children's Hospital of Chicago Research Center
Street address 2430 N Halsted Street Box 211
City Chicago
State/province IL
ZIP/Postal code 60614
Country USA
 
Platform ID GPL8971
Series (2)
GSE52180 A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function (array)
GSE52181 A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

Data table header descriptions
ID_REF
VALUE RMA-normalized, averaged gene-level signal intensity, log2 transformed

Data table
ID_REF VALUE
NM_000014 9.11679
NM_000015 5.1163
NM_000016 12.49221
NM_000017 9.57162
NM_000018 12.02698
NM_000019 11.11669
NM_000020 8.92757
NM_000021 12.86982
NM_000022 9.96388
NM_000023 8.7028
NM_000024 13.03444
NM_000025 5.69327
NM_000026 11.34413
NM_000027 11.97507
NM_000028 11.06638
NM_000029 5.79978
NM_000030 9.31633
NM_000031 12.28017
NM_000032 8.21386
NM_000033 9.23165

Total number of rows: 24000

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM1260862_35599502_532.pair.gz 1.1 Mb (ftp)(http) PAIR
Processed data included within Sample table

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