NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1260863 Query DataSets for GSM1260863
Status Public on Nov 08, 2013
Title pHTE65p0
Sample type RNA
 
Source name Human tracheal epithelial cells
Organism Homo sapiens
Characteristics developmental stage: adult
tissue: trachea
cell type: epithelia
Treatment protocol No treatment
Growth protocol Growth conditions as described in Davis PB, Silski CL, Kercsmar CM, et al. Beta-adrenergic receptors on human tracheal epithelial cells in primary culture. Am J Physiol 1990;258:C71–6.
Extracted molecule total RNA
Extraction protocol RNA was isolated by Trizol extraction from two primary cultures of HTE (human tracheal epithelial) cells. Total RNA was purified by Millipore Microcon YM-100 filter centrifugation.
Label Cy3
Label protocol Labeling was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
Scan protocol Scanning was performed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
Description Expression values for human genes in HTE cells
Data processing Data were processed by NimbleGen following their standard operating protocol. See www.NimbleGen.com.
 
Submission date Nov 07, 2013
Last update date Nov 08, 2013
Contact name Ann Harris
Organization name Lurie Children's Hospital of Chicago Research Center
Street address 2430 N Halsted Street Box 211
City Chicago
State/province IL
ZIP/Postal code 60614
Country USA
 
Platform ID GPL8971
Series (2)
GSE52180 A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function (array)
GSE52181 A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

Data table header descriptions
ID_REF
VALUE RMA-normalized, averaged gene-level signal intensity, log2 transformed

Data table
ID_REF VALUE
NM_000014 8.595
NM_000015 5.46297
NM_000016 11.8998
NM_000017 9.476
NM_000018 13.33566
NM_000019 11.16879
NM_000020 7.84945
NM_000021 13.23366
NM_000022 10.8678
NM_000023 7.93783
NM_000024 12.04129
NM_000025 5.56236
NM_000026 11.60508
NM_000027 10.92567
NM_000028 10.50236
NM_000029 5.94494
NM_000030 8.33067
NM_000031 12.31301
NM_000032 7.30769
NM_000033 10.66749

Total number of rows: 24000

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM1260863_35599602_532.pair.gz 1.1 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap