NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1313838 Query DataSets for GSM1313838
Status Public on Jul 20, 2014
Title V2_09_EAE
Sample type RNA
 
Source name Vaginal Epithelium
Organism Homo sapiens
Characteristics tissue: Vaginal Epithelium
visit: 2
first intervention: placebo
second intervention: NA
responder status: NA
ph: 6
nugent score: 5
Extracted molecule total RNA
Extraction protocol Samples collected and stored in 500 µL RNAlater and frozen at -80˚C until extraction. Samples were thawed on ice, vortexed, and centrifuged (5,000 g, 10 min, 4˚C). The supernatant was discarded and the RNA was extracted using TRIzol and Turbo DNase (Life Technologies) according to the manufacturers protocols.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Data processing RMA
 
Submission date Jan 23, 2014
Last update date Jul 20, 2014
Contact name Jordan Eduard Bisanz
E-mail(s) jbisanz@uwo.ca
Organization name Lawson Health Research Institute
Street address 268 Grosvenor Street, Room F2-116
City London
State/province Ontario
ZIP/Postal code N6A 4V2
Country Canada
 
Platform ID GPL16686
Series (1)
GSE54363 Effect of L. rhamnosus GR-1 and L. reuteri RC-14 on host responses in a trial of post-menopausal women

Data table header descriptions
ID_REF
VALUE log2-rma

Data table
ID_REF VALUE
16650001 2.19821
16650003 3.30117
16650005 4.0699
16650007 3.00172
16650009 1.74934
16650011 2.44662
16650013 2.16431
16650015 3.26916
16650017 2.66401
16650019 3.63878
16650021 3.37927
16650023 3.30841
16650025 3.16667
16650027 1.93641
16650029 4.07505
16650031 5.07761
16650033 1.32131
16650035 1.86587
16650037 1.85507
16650041 6.99814

Total number of rows: 53617

Table truncated, full table size 884 Kbytes.




Supplementary file Size Download File type/resource
GSM1313838_E1275.CEL.gz 8.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap