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Sample GSM1313848 Query DataSets for GSM1313848
Status Public on Jul 20, 2014
Title V7_14_DIW
Sample type RNA
 
Source name Vaginal Epithelium
Organism Homo sapiens
Characteristics tissue: Vaginal Epithelium
visit: 7
first intervention: probiotic
second intervention: placebo
responder status: nonresponder
ph: 5
nugent score: 4
Extracted molecule total RNA
Extraction protocol Samples collected and stored in 500 µL RNAlater and frozen at -80˚C until extraction. Samples were thawed on ice, vortexed, and centrifuged (5,000 g, 10 min, 4˚C). The supernatant was discarded and the RNA was extracted using TRIzol and Turbo DNase (Life Technologies) according to the manufacturers protocols.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Data processing RMA
 
Submission date Jan 23, 2014
Last update date Jul 20, 2014
Contact name Jordan Eduard Bisanz
E-mail(s) jbisanz@uwo.ca
Organization name Lawson Health Research Institute
Street address 268 Grosvenor Street, Room F2-116
City London
State/province Ontario
ZIP/Postal code N6A 4V2
Country Canada
 
Platform ID GPL16686
Series (1)
GSE54363 Effect of L. rhamnosus GR-1 and L. reuteri RC-14 on host responses in a trial of post-menopausal women

Data table header descriptions
ID_REF
VALUE log2-rma

Data table
ID_REF VALUE
16650001 1.81414
16650003 2.44738
16650005 3.68115
16650007 3.30672
16650009 1.38941
16650011 2.54723
16650013 2.83981
16650015 3.28337
16650017 2.48153
16650019 3.75951
16650021 2.7467
16650023 2.62677
16650025 2.92223
16650027 2.66538
16650029 3.59528
16650031 5.1188
16650033 1.75376
16650035 2.04906
16650037 2.23968
16650041 7.49665

Total number of rows: 53617

Table truncated, full table size 884 Kbytes.




Supplementary file Size Download File type/resource
GSM1313848_E1288.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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