|
| Status |
Public on Apr 08, 2014 |
| Title |
T2N H3K4me3 ChIP |
| Sample type |
SRA |
| |
|
| Source name |
twin 2_euploid_fetal primary fibroblasts_ChIP
|
| Organism |
Homo sapiens |
| Characteristics |
disease: Euploid
tissue: Fetal primary fibroblasts
chip antibody: H3K4me3 antibody
chip antibody vendor: Abcam
chip antibody cat. #: ab8580
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Histone-DNA complexes were isolated with H3K4me3 antibody (Abcam ab8580)
ChIP-Seq DNA Sample Prep Kit from Illumina
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Basecalling performed with CASAVA version 1.8
Mapping with BWA, default parameters
Peak calling by HOMER
Genome_build: hg19
Supplementary_files_format_and_content: H3K4me3_2Ain1B.txt: text file, peak coordinates T2N, normalized tag count of peaks in T2N, peak coordinates T1DS, normalized tag count of peaks in T1DS
|
| |
|
| Submission date |
Mar 03, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Audrey Letourneau |
| E-mail(s) |
audrey.letourneau@unige.ch
|
| Organization name |
University of Geneva Medical School
|
| Department |
Genetic Medicine and Development
|
| Street address |
Rue Michel-Servet 1
|
| City |
Geneva |
| ZIP/Postal code |
1211 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL16791 |
| Series (2) |
| GSE55426 |
Domains of genomewide gene expression dysregulation in Down syndrome |
| GSE55506 |
Domains of genomewide gene expression dysregulation in Down syndrome [ChIP-seq] |
|
| Relations |
| BioSample |
SAMN02671055 |
| SRA |
SRX480793 |
