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Sample GSM1361427 Query DataSets for GSM1361427
Status Public on Apr 01, 2014
Title Twin24-1
Sample type RNA
 
Source name lymphoblastoid cells
Organism Homo sapiens
Characteristics twin pairing: MZ twin pair 2 sibling 1
cell type: lymphoblastoid cells
Extracted molecule total RNA
Extraction protocol Cells were lysed and RNA extracted with the QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser and Nanodrop
Label biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Data processing The data was log transformed and then VST-quantile normalized based on R packages (lumi v.14.01, affy v.1.41.2).
 
Submission date Apr 01, 2014
Last update date Apr 01, 2014
Contact name Hyo-Jeong Ban
E-mail(s) hj.ban81@gmail.com
Organization name KCDC
Department bioinformatics
Street address OHTAC, Yeonje-ree 643, Osong-eup, Chungwon-Koon
City Choongchung-Buk-do
ZIP/Postal code 363-951
Country South Korea
 
Platform ID GPL10558
Series (2)
GSE53822 Genetic differences underlying chromatin discordance between monozygotic twins [expression profile]
GSE53823 Genetic differences underlying chromatin discordance between monozygotic twins

Data table header descriptions
ID_REF
VALUE log2 VST-quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 8.028895305 0.1337662
ILMN_2055271 8.001704917 0.2090909
ILMN_1736007 7.960666797 0.4038961
ILMN_2383229 7.94027598 0.4961039
ILMN_1806310 7.94451111 0.4766234
ILMN_1779670 7.953080184 0.438961
ILMN_1653355 8.026891675 0.1376623
ILMN_1717783 7.815034358 0.9701298
ILMN_1705025 8.0223002 0.1428571
ILMN_1814316 8.004022666 0.2
ILMN_2359168 7.896259544 0.7233766
ILMN_1731507 7.828225132 0.9467533
ILMN_1787689 7.920726321 0.6025974
ILMN_3241953 9.041633853 0
ILMN_1745607 7.898448201 0.7181818
ILMN_2136495 7.846716263 0.9103896
ILMN_1668111 7.935776441 0.5103896
ILMN_2295559 7.973577065 0.3194805
ILMN_1735045 9.589920412 0
ILMN_1680754 8.064860134 0.06493507

Total number of rows: 47323

Table truncated, full table size 1494 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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