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Sample GSM1361450 Query DataSets for GSM1361450
Status Public on Apr 01, 2014
Title Twin35-2
Sample type RNA
 
Source name lymphoblastoid cells
Organism Homo sapiens
Characteristics twin pairing: MZ twin pair 2 sibling 2
cell type: lymphoblastoid cells
Extracted molecule total RNA
Extraction protocol Cells were lysed and RNA extracted with the QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser and Nanodrop
Label biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Data processing The data was log transformed and then VST-quantile normalized based on R packages (lumi v.14.01, affy v.1.41.2).
 
Submission date Apr 01, 2014
Last update date Apr 01, 2014
Contact name Hyo-Jeong Ban
E-mail(s) hj.ban81@gmail.com
Organization name KCDC
Department bioinformatics
Street address OHTAC, Yeonje-ree 643, Osong-eup, Chungwon-Koon
City Choongchung-Buk-do
ZIP/Postal code 363-951
Country South Korea
 
Platform ID GPL10558
Series (2)
GSE53822 Genetic differences underlying chromatin discordance between monozygotic twins [expression profile]
GSE53823 Genetic differences underlying chromatin discordance between monozygotic twins

Data table header descriptions
ID_REF
VALUE log2 VST-quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 8.110126182 0.02987013
ILMN_2055271 8.048637016 0.1051948
ILMN_1736007 7.992700021 0.2532468
ILMN_2383229 7.985494802 0.2766234
ILMN_1806310 7.948495554 0.4545455
ILMN_1779670 7.947074406 0.4636364
ILMN_1653355 7.978357906 0.2987013
ILMN_1717783 7.800295644 0.9766234
ILMN_1705025 7.936003098 0.525974
ILMN_1814316 8.001239965 0.2233766
ILMN_2359168 7.867974777 0.8441558
ILMN_1731507 7.866221616 0.8532467
ILMN_1787689 7.990073494 0.2571429
ILMN_3241953 8.880736272 0
ILMN_1745607 7.886781375 0.7675325
ILMN_2136495 7.832396148 0.9363636
ILMN_1668111 7.867014778 0.8506494
ILMN_2295559 8.001978938 0.2194805
ILMN_1735045 9.474638018 0
ILMN_1680754 8.188770322 0.005194805

Total number of rows: 47323

Table truncated, full table size 1496 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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