|
Status |
Public on Apr 30, 2014 |
Title |
RNA from BM MSC donor 3 |
Sample type |
RNA |
|
|
Source name |
BM-derived MSC
|
Organism |
Homo sapiens |
Characteristics |
donor id: donor 3 tisse source for mscs: bone marrow (BM) cell type: Mesenchymal Stromal Cells (MSC) sample isolation method: plastic adherence passage: passage 2
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was isolated from 5x10E6 cells using the Qiagen RNeasy PlusMini Kit.
|
Label |
biotin
|
Label protocol |
Bioting-labeling using standard Afymetrix WT Terminal Labeling Kit
|
|
|
Hybridization protocol |
Fragmented and labeled targets were hybridized overnight at 45C, 60rpm in an Affymetrix GeneChip Hybridization Oven 645.
|
Scan protocol |
Genechips weres scanned using the Affymetrix GeneChip Scanner 3000 7G
|
Data processing |
Arrays were normalized in R using oligolibrary. The script (R) used to generate the matrix is provided (data_processing_script.txt).
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|
|
Submission date |
Apr 29, 2014 |
Last update date |
Apr 30, 2014 |
Contact name |
Andreas Reinisch |
E-mail(s) |
reinisch@stanford.edu
|
Organization name |
Stanford University
|
Department |
Institute for Stem Cell Biology and Regenerative Medicine
|
Street address |
265 Campus Drive
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
|
|
Platform ID |
GPL16686 |
Series (1) |
GSE57151 |
Epigenetic and in vivo comparison of diverse mesenchymal stromal cell sources reveals an endochonrdal signature for human hematopoietic niche formation |
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