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Status |
Public on Jan 01, 2015 |
Title |
CRTC1 n2 |
Sample type |
RNA |
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|
Source name |
Caco-2, CRTC1 overexpression
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Organism |
Homo sapiens |
Characteristics |
cell line: Caco-2 cell type: epithelial colonic tumor cell line expression vector: CRTC1
|
Treatment protocol |
Subconfluent Caco-2 cells were transfected with 200ng of CRTC1 expression plasmid or corresponding empty vector (pBS) overnight.
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Growth protocol |
Caco-2 clone TC7 cells (kind gift of Monique Rousset, Paris, France) were grown in DMEM High Glucose (4.5g/l) medium supplemented with 10% serum and 1% penicillin/streptomycin.
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Extracted molecule |
total RNA |
Extraction protocol |
Isolation of mRNA from cultured cells were performed by using RNeasy Mini Kit (Qiagen).
|
Label |
biotin
|
Label protocol |
Biotinylated cDNA were prepared according to the standard Affymetrix protocol from total RNA (following the GeneChip Whole Transcript (WT) Sense Target labelling assay kit Affymetrix).
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|
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Hybridization protocol |
Following fragmentation, cDNA were hybridized for 16 hr at 45C on Affymetrix Human Gene 2.0 ST Arrays. Affymetrix GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
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Scan protocol |
GeneChips were scanned using the GCS 3000 scanner (Affymetrix).
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Description |
Sample name: 4_CRTC1 Gene expression data from Caco-2 epithelial colonic tumor cell with CRTC1 overexpression.
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Data processing |
The data were preprocessed and analyzed using Partek Genomic Suite.
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Submission date |
Jul 24, 2014 |
Last update date |
Jan 01, 2015 |
Contact name |
Florent Dumont |
E-mail(s) |
florent.dumont@u-psud.fr
|
Organization name |
Université Paris-Saclay
|
Street address |
17 avenue des sciences
|
City |
91400 Orsay |
State/province |
Ile de France |
ZIP/Postal code |
91400 |
Country |
France |
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|
Platform ID |
GPL17930 |
Series (1) |
GSE59730 |
CRTC1 overexpression in Caco-2 colon cancer cells |
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