|
| Status |
Public on Oct 22, 2014 |
| Title |
SEQC_NB008 [2] |
| Sample type |
SRA |
| |
|
| Source name |
neuroblastoma
|
| Organism |
Homo sapiens |
| Characteristics |
training/validation: Validation
Sex: M
age: 1652
efs day: 3526
efs bin: 0
os day: 3526
os bin: 0
high risk: HR
a_efs_all: 0
b_os_all: 0
c_sex_all: 0
e_efs_hr: 0
f_os_hr: 0
tissue: neuroblastoma
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina libraries were prepared using standard Illumina TruSeq RNA-Seq protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Illumina Casava1.8 software used for Illumina basecalling.
Reads were aligned with Novoalign and quantified with in-house program
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include log2 RPM for each transcript
|
| |
|
| Submission date |
Oct 21, 2014 |
| Last update date |
Feb 27, 2017 |
| Contact name |
Leming Shi |
| E-mail(s) |
lemingshi@fudan.edu.cn
|
| Phone |
+86-18616827008
|
| Organization name |
Fudan University
|
| Department |
School of Life Sciences
|
| Lab |
Center for Pharmacogenomics
|
| Street address |
2005 Songhu Road
|
| City |
Shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE47774 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium |
| GSE62564 |
An Investigation of Biomarkers Derived from Legacy Microarray Data for Their Utility in the RNA-Seq Era |
|
| Relations |
| BioSample |
SAMN03121934 |
