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GEO accession:
Sample GSM154137
Query DataSets for GSM154137
Status
Public on Jan 13, 2007
Title
Alzheimer_Control_APOE33
Sample type
SAGE
Anchor
NlaIII
Tag Count
70470
Tag Length
10
Source name
Hippocampus; APOE3/3
Organism
Homo sapiens
Characteristics
Gender: Female
Age: 80.7
B&B Stage: I
PMD: 1:10
Biomaterial provider
Duke ADRC
Extracted molecule
total RNA
Extraction protocol
As per Trizol Manufacturer Protocol
Description
N/A
Submission date
Jan 05, 2007
Last update date
Nov 19, 2008
Contact name
Puting Xu
E-mail(s)
pxu@chg.duhs.duke.edu
Phone
919-684-0686
Fax
919-684-0939
Organization name
Duke
Department
Medicine
Lab
Center for Human Genetics
Street address
595 LaSalle St
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Platform ID
GPL4
Series (1)
GSE6677
A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease
Data table header descriptions
TAG
SAGE TAG sequence
COUNT
Frequency of given tag
TPM
tags per million
Data table
TAG
COUNT
TPM
AAGGAGAAGG
1
14.19
CAGTGGGTGG
3
42.57
GAGGAATATG
3
42.57
AGGACCCTGG
1
14.19
GGTTAAATCT
1
14.19
CCCATCGTCC
661
9379.88
TTAAGAGGGG
7
99.33
AAGTACAACC
1
14.19
CCTGTAAGCC
5
70.95
GCCATCCCCT
33
468.28
CCTGTAAGGG
1
14.19
ATAGGACTGA
1
14.19
CCTGTGTATG
8
113.52
CCAGTTCCTG
25
354.76
CGCCGCCGGC
42
596.00
ATGTGAAACT
7
99.33
GAGGACCGTA
1
14.19
ACTAACACCC
483
6853.98
TGCACTTCAA
195
2767.13
AACCCAGCAG
3
42.57
Total number of rows:
23128
Table truncated, full table size
431 Kbytes
.
Supplementary data files not provided
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