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GEO accession:
Sample GSM154138
Query DataSets for GSM154138
Status
Public on Jan 13, 2007
Title
Alzheimer_Affected_APOE34
Sample type
SAGE
Anchor
NlaIII
Tag Count
72095
Tag Length
10
Source name
Hippocampus; APOE3/4
Organism
Homo sapiens
Characteristics
Gender: Female
Age: 86.9
B&B Stage: IV
PMD: 1:30
Biomaterial provider
Duke ADRC
Extracted molecule
total RNA
Extraction protocol
As per Trizol Manufacturer Protocol
Description
N/A
Submission date
Jan 05, 2007
Last update date
Nov 19, 2008
Contact name
Puting Xu
E-mail(s)
pxu@chg.duhs.duke.edu
Phone
919-684-0686
Fax
919-684-0939
Organization name
Duke
Department
Medicine
Lab
Center for Human Genetics
Street address
595 LaSalle St
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Platform ID
GPL4
Series (1)
GSE6677
A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease
Data table header descriptions
TAG
SAGE TAG sequence
COUNT
Frequency of given tag
TPM
tags per million
Data table
TAG
COUNT
TPM
CCAGGCACGC
3
41.61
CAGTTATCAT
1
13.87
TGATTTCACT
269
3731.19
CCGTAGTGCC
4
55.48
GCTAAAAAAA
4
55.48
AACCCGGGAG
413
5728.55
ACTCCTGTCC
9
124.84
CCTGTAATCC
1161
16103.75
ACAAACTTAG
54
749.01
AAGGAGATGG
33
457.73
CTGCTGCACT
14
194.19
ACTTTTTCAA
198
2746.38
GTGAAACCCC
1427
19793.33
AGAAAAAAAA
12
166.45
GTAAGTGTAC
21
291.28
GGAGGCAGAA
1
13.87
TAACCAAGAG
1466
20334.28
GTGGTGAGTG
7
97.09
CCAATAAAGT
5
69.35
CCACTGCACT
1216
16866.63
Total number of rows:
24663
Table truncated, full table size
459 Kbytes
.
Supplementary data files not provided
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