|
| Status |
Public on Dec 31, 2015 |
| Title |
Day 8 EB |
| Sample type |
SRA |
| |
|
| Source name |
MniPSC-CD34+ cells before induction
|
| Organism |
Macaca nemestrina |
| Characteristics |
cell line: MnIPSC line-7
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Trizol treatment
Illumina TruSeq PE 51x2 (RNA-seq)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Sample 1
|
| Data processing |
Illumina Casava1.8 software used for basecalling.
RNAseq: Sequence reads were aligned to hg19 using TopHat with default parameters
RNAseq: FPKM were obtained using CuffLinks with upper-quartile and GC normalization
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq: tab-delimited FPKM values for each Refseq gene.
|
| |
|
| Submission date |
Jan 04, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Olivier Elemento |
| E-mail(s) |
ole2001@med.cornell.edu
|
| Organization name |
WEILL MEDICAL COLLEGE OF CORNELL UNIV
|
| Street address |
1305 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
| |
|
| Platform ID |
GPL19597 |
| Series (1) |
| GSE64644 |
Vascular niche induction of hematopoietic progenitors from pluripotent stem cells |
|
| Relations |
| BioSample |
SAMN03274824 |
| SRA |
SRX827650 |
