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Sample GSM1576160 Query DataSets for GSM1576160
Status Public on Dec 31, 2015
Title MUVEC
Sample type SRA
 
Source name monkey umbilical vein endothelial cells
Organism Macaca nemestrina
Characteristics cell type: umbilical vein endothelial cells
Extracted molecule total RNA
Extraction protocol RNA was harvested using Trizol treatment
Illumina TruSeq PE 51x2 (RNA-seq)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Sample 5
Data processing Illumina Casava1.8 software used for basecalling.
RNAseq: Sequence reads were aligned to hg19 using TopHat with default parameters
RNAseq: FPKM were obtained using CuffLinks with upper-quartile and GC normalization
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq: tab-delimited FPKM values for each Refseq gene.
 
Submission date Jan 04, 2015
Last update date May 15, 2019
Contact name Olivier Elemento
E-mail(s) ole2001@med.cornell.edu
Organization name WEILL MEDICAL COLLEGE OF CORNELL UNIV
Street address 1305 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL19597
Series (1)
GSE64644 Vascular niche induction of hematopoietic progenitors from pluripotent stem cells
Relations
BioSample SAMN03274822
SRA SRX827654

Supplementary file Size Download File type/resource
GSM1576160_s_MUVEC_FPKM.txt.gz 106.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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