|
| Status |
Public on May 27, 2016 |
| Title |
WGS analysis of UCSF-4 embryonic stem cell line (A27731) |
| Sample type |
SRA |
| |
|
| Source name |
A27731-1
|
| Organism |
Homo sapiens |
| Characteristics |
submitted sample id: JOC226-DNA
biomaterial_type: cell line
line: UCSF-4
Sex: female
body site: Embryo ICM
histological type: Embryonic stem cell
is tumor: No
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
library construction protocol: Refer to document 'SLX-PET Protocol for Illumina Sample Prep' from BC at the Roadmap Epigenomics Project site, Experimental Protocols page (URL: http://www.roadmapepigenomics.org/protocols/type/experimental/)
|
| |
|
| Library strategy |
WGS |
| Library source |
genomic |
| Library selection |
RANDOM |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
design description: WGS analysis of UCSF-4 embryonic stem cell line (A27731) using Illumina HiSeq 2000
library name: A27731
EXPERIMENT_TYPE: Whole Genome Sequencing
EXTRACTION_PROTOCOL: Refer to document 'SLX-PET Protocol for Illumina Sample Prep' from BC at the Roadmap Epigenomics Project site, Experimental Protocols page (URL: http://www.roadmapepigenomics.org/protocols/type/experimental/)
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Covaris-E210
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 0.75 min
****************
For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
****************
|
| Data processing |
Various levels of processed data files will be made available as this project proceeds.
|
| |
|
| Submission date |
Jan 12, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
UCSF-UBC CENTER |
| Organization name |
UCSF-UBC
|
| Street address |
UCSF-UBC
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE16368 |
UCSF-UBC Human Reference Epigenome Mapping Project |
|
| Relations |
| SRA |
SRX1158131 |
| BioSample |
SAMN03416811 |
