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Sample GSM159289 Query DataSets for GSM159289
Status Public on Apr 15, 2007
Title Drosophila_stwlbam_rep2
Sample type RNA
 
Source name Drosophila ovaries, stwl bam double mutant
Organism Drosophila melanogaster
Characteristics Genotype: stwl bam double mutants
Aged 3-5 days
Biomaterial provider McKearin lab
Treatment protocol None
Growth protocol Standard cornmeal molasses + dry yeast
Extracted molecule total RNA
Extraction protocol Total RNA extracted with TRIzol reagent
Label biotin
Label protocol Standard labeling protocol
 
Hybridization protocol Full protocol at: http://microarray.swmed.edu/AffyHybProtocol.htm
Scan protocol Standard Affymetrix scanning protocol
Description Drosophila ovaries, stwl bam double mutant
Data processing Affymetrix GCOS
GeneSpring
 
Submission date Jan 29, 2007
Last update date Aug 28, 2018
Contact name Dennis McKearin
Phone 214-648-4944
Organization name UT Southwestern Med. Ctr.
Department Molecular Biology
Street address 6000 Harry Hines Blvd., NA5.214
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL1322
Series (1)
GSE6928 Stonewalling Drosophila stem cell differentiation by epigenetic controls
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
Stat Pairs Number of oligo pairs per chip
Stat Pairs Used Number of oligo pairs detected
VALUE Signal intensity
ABS_CALL Call flags (present/absent)
DETECTION P-VALUE Statistical P-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 184 P 0.00034
AFFX-BioB-M_at 20 20 209.8 P 0.000509
AFFX-BioB-3_at 20 20 149.9 P 0.004484
AFFX-BioC-5_at 20 20 479.7 P 0.000195
AFFX-BioC-3_at 20 20 429.7 P 0.00006
AFFX-BioDn-5_at 20 20 889.5 P 0.000044
AFFX-BioDn-3_at 20 20 3374.5 P 0.000147
AFFX-CreX-5_at 20 20 6577.1 P 0.000052
AFFX-CreX-3_at 20 20 9388 P 0.000044
AFFX-DapX-5_at 20 20 2.2 A 0.617401
AFFX-DapX-M_at 20 20 18.8 A 0.175328
AFFX-DapX-3_at 20 20 40.8 A 0.250796
AFFX-LysX-5_at 20 20 4.4 A 0.712257
AFFX-LysX-M_at 20 20 5.7 A 0.514891
AFFX-LysX-3_at 20 20 19.6 P 0.018281
AFFX-PheX-5_at 20 20 3.1 A 0.724854
AFFX-PheX-M_at 20 20 1.5 A 0.824672
AFFX-PheX-3_at 20 20 37.3 A 0.5
AFFX-ThrX-5_at 20 20 21.6 A 0.382599
AFFX-ThrX-M_at 20 20 2.3 A 0.860538

Total number of rows: 18952

Table truncated, full table size 618 Kbytes.




Supplementary file Size Download File type/resource
GSM159289.CEL.gz 3.3 Mb (ftp)(http) CEL

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