|
| Status |
Public on Feb 27, 2016 |
| Title |
Mel_12_736_CD271+ |
| Sample type |
genomic |
| |
|
| Source name |
M12-736
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: CD271+ purified cells
tissue: primary human melanoma (stage 3)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of genomic DNA from snap-frozen purified cell pellets was performed using the Qiagen Dneasy Blood and Tissue kit, according to the manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
according to the Illumina protocol
|
| |
|
| Hybridization protocol |
according to the Illumina protocol
|
| Scan protocol |
i-scan
|
| Description |
PDX melanoma tumor was SNP genotyped on an Illumina HumanOmni2.5-8v1.1 Genotyping BeadChips.
|
| Data processing |
Genomic DNA extracted from purified human melanoma cells was genotyped using Infinium HD HumanOmni2.58 or HTS HumanOmniExpress (Illumina) beadchips and prepared for analysis using GenomeStudio data analysis software
|
| |
|
| Submission date |
Mar 02, 2015 |
| Last update date |
Feb 27, 2016 |
| Contact name |
Vincent Dominique Corbin |
| E-mail(s) |
vcorbin@wehi.edu.au
|
| Organization name |
Walter and Eliza Hall Institute
|
| Department |
Bioinformatics
|
| Lab |
Papenfuss Lab
|
| Street address |
1G Royal parade
|
| City |
Parkville |
| State/province |
VIC |
| ZIP/Postal code |
3052 |
| Country |
Australia |
| |
|
| Platform ID |
GPL18952 |
| Series (1) |
| GSE66409 |
Expression of CD271 in genetically unstable patient melanomas is highly variable and not linked to tumorigenic potential in an assay-dependent manner |
|
