|
Status |
Public on Feb 27, 2016 |
Title |
Mel_12_1254_CD271- |
Sample type |
genomic |
|
|
Source name |
M12-1254
|
Organism |
Homo sapiens |
Characteristics |
sample type: CD271- purified cells tissue: primary human melanoma (stage 3)
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extraction of genomic DNA from snap-frozen purified cell pellets was performed using the Qiagen Dneasy Blood and Tissue kit, according to the manufacturer's instructions
|
Label |
biotin
|
Label protocol |
according to the Illumina protocol
|
|
|
Hybridization protocol |
according to the Illumina protocol
|
Scan protocol |
i-scan
|
Description |
PDX melanoma tumor was SNP genotyped on an Illumina HumanOmni2.5-8v1.1 Genotyping BeadChips.
|
Data processing |
Genomic DNA extracted from purified human melanoma cells was genotyped using Infinium HD HumanOmni2.58 or HTS HumanOmniExpress (Illumina) beadchips and prepared for analysis using GenomeStudio data analysis software
|
|
|
Submission date |
Mar 02, 2015 |
Last update date |
Feb 27, 2016 |
Contact name |
Vincent Dominique Corbin |
E-mail(s) |
vcorbin@wehi.edu.au
|
Organization name |
Walter and Eliza Hall Institute
|
Department |
Bioinformatics
|
Lab |
Papenfuss Lab
|
Street address |
1G Royal parade
|
City |
Parkville |
State/province |
VIC |
ZIP/Postal code |
3052 |
Country |
Australia |
|
|
Platform ID |
GPL18952 |
Series (1) |
GSE66409 |
Expression of CD271 in genetically unstable patient melanomas is highly variable and not linked to tumorigenic potential in an assay-dependent manner |
|