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Sample GSM1626340 Query DataSets for GSM1626340
Status Public on Sep 28, 2015
Title BMO_rep1
Sample type RNA
 
Source name Original Bone Marrow RNA
Organism Homo sapiens
Characteristics sample type: pure bone marrow RNA (BMO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description rep1
Data processing The image-derived data were processed with Illumina GenomeStudio
Data values are background subtracted and quantile normalized in linear scale for Matrix normalized and are background retained and non-normalized in linear scale for Matrix non-normalized.
 
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
E-mail(s) jyu@wustl.edu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL10558
Series (2)
GSE66614 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Illumina_HT12)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -1.936334 0.6285715
ILMN_2055271 32.86492 0.01298701
ILMN_1736007 -7.971203 0.9103896
ILMN_2383229 22.05133 0.03766234
ILMN_1806310 1.756642 0.4051948
ILMN_1779670 3.964372 0.2935065
ILMN_1653355 9.996943 0.1467533
ILMN_1717783 -12.01261 0.9805195
ILMN_1705025 1.926169 0.3961039
ILMN_1814316 8.790886 0.1701299
ILMN_2359168 -1.05086 0.5675325
ILMN_1731507 -10.20672 0.9545454
ILMN_1787689 2.973014 0.3467532
ILMN_3241953 -5.726121 0.8220779
ILMN_1745607 -9.143887 0.9402598
ILMN_2136495 -9.794741 0.9506493
ILMN_1668111 -7.079835 0.8779221
ILMN_2295559 3.891697 0.2974026
ILMN_1735045 89.37422 0
ILMN_1680754 12.7921 0.1

Total number of rows: 47306

Table truncated, full table size 1417 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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