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Sample GSM171044 Query DataSets for GSM171044
Status Public on Mar 01, 2007
Title TAFII p250 (6B3) HeLa RenLab ENCODE PCR tiling array replicate 16 ENC1566
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from HeLa cells
Organism Homo sapiens
Characteristics Input DNA from HeLa cells
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol NimbleGen
Scan protocol NimbleGen
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Feb 23, 2007
Last update date Feb 26, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1454
Series (1)
GSE7118 Ludwig Institute/UCSD ENCODE project March 2007 Release

Data table header descriptions
ID_REF ID_REF
VALUE same as UNF_VALUE but with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 0.345 1.16 3.273e-01 1002.00 863.54 1198 1198 590 196 255 544 1070 1115 203 281 280 73 0 0.345
2 0.460 1.26 2.452e-01 956.00 760.66 1146 1104 435 190 221 167 976 974 313 281 282 69 0 0.460
3 0.118 0.99 5.102e-01 1980.00 1996.32 2177 2124 698 197 224 160 2120 2140 715 296 296 73 0 0.118
4 0.079 0.97 5.438e-01 1332.00 1380.13 1531 1644 585 199 229 167 1544 1426 418 283 292 75 0 0.079
5 0.260 1.09 3.918e-01 1311.00 1198.45 1492 1553 621 181 218 169 1382 1429 416 287 293 91 0 0.260
6 0.421 1.22 2.651e-01 1924.00 1572.76 2104 2129 739 180 213 155 1723 1726 262 286 285 70 0 0.421
7 0.011 0.92 6.015e-01 1371.00 1489.58 1561 1623 611 190 220 146 1646 1684 428 285 286 74 0 0.011
8 0.265 1.10 3.870e-01 940.00 855.88 1126 1118 482 186 221 152 1060 1103 218 278 281 72 0 0.265
9 -0.114 0.84 7.013e-01 982.00 1163.42 1188 1134 399 206 231 153 1333 1390 294 270 273 76 0 -0.114
10 -0.012 0.91 6.200e-01 1079.00 1190.79 1289 1263 498 210 235 161 1365 1365 320 277 280 71 0 -0.012
11 -0.171 0.81 7.329e-01 1035.00 1275.06 1250 1334 577 215 231 154 1456 1585 562 291 295 75 0 -0.171
12 0.225 1.07 4.288e-01 975.00 912.79 1163 1256 794 188 219 159 1124 1394 669 290 295 79 0 0.225
13 0.070 0.96 5.523e-01 1263.00 1316.65 1458 1470 474 195 220 154 1495 1502 222 292 297 78 0 0.070
14 -0.146 0.83 7.214e-01 1278.00 1547.58 1476 1608 671 198 228 158 1705 1623 396 291 292 76 0 -0.146
15 0.257 1.09 3.913e-01 1514.00 1386.70 1701 1725 565 187 214 150 1552 1549 268 285 287 75 0 0.257
16 -0.036 0.89 6.417e-01 1564.00 1754.44 1745 1661 559 181 212 163 1881 1827 306 278 279 77 0 -0.036
17 0.436 1.24 2.553e-01 1564.00 1265.21 1735 1739 634 171 212 198 1443 1456 190 287 289 77 0 0.436
18 -0.136 0.83 7.158e-01 1857.00 2233.82 2036 2119 806 179 217 173 2326 2522 674 285 282 77 0 -0.136
19 0.91 5.116e-01 10.00 10.94 175 197 160 180 213 182 288 283 77 289 294 75 -50 2.322
20 0.402 1.21 2.751e-01 4157.00 3443.21 4342 4431 1128 185 225 180 3425 3370 374 279 284 72 0 0.402

Total number of rows: 25246

Table truncated, full table size 2390 Kbytes.




Supplementary file Size Download File type/resource
GSM171044.gpr.gz 2.2 Mb (ftp)(http) GPR

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