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Sample GSM171062 Query DataSets for GSM171062
Status Public on Mar 01, 2007
Title TAFII p250 (6B3) HeLa RenLab ENCODE PCR tiling array replicate 14 ENC1669
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from HeLa cells
Organism Homo sapiens
Characteristics Input DNA from HeLa cells
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol NimbleGen
Scan protocol NimbleGen
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Feb 23, 2007
Last update date Feb 26, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1454
Series (1)
GSE7118 Ludwig Institute/UCSD ENCODE project March 2007 Release

Data table header descriptions
ID_REF ID_REF
VALUE same as UNF_VALUE but with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -2.054 0.31 9.771e-01 407.00 1318.98 545 608 331 138 175 162 1937 1905 487 247 254 112 0 -2.054
2 -1.858 0.35 9.628e-01 452.00 1279.17 586 632 391 134 183 230 1884 1839 621 245 301 667 0 -1.858
3 -2.169 0.28 9.831e-01 1079.00 3786.79 1211 1266 539 132 177 171 5098 5099 1223 246 260 123 0 -2.169
4 1.28 4.868e-01 10.00 7.80 123 180 232 130 180 225 240 246 104 243 265 384 -50 1.222
5 -2.470 0.23 9.886e-01 626.00 2706.64 749 802 427 123 163 151 3711 3667 1044 243 248 91 0 -2.470
6 -1.675 0.40 9.543e-01 1111.00 2768.29 1244 1321 677 133 176 167 3789 3552 1011 242 248 91 0 -1.675
7 -1.956 0.33 9.742e-01 908.00 2749.56 1046 1169 634 138 278 1231 3768 3781 889 245 660 4526 0 -1.956
8 -2.267 0.27 9.863e-01 490.00 1841.11 629 671 384 139 366 1746 2616 2701 435 257 970 6020 0 -2.267
9 -2.883 0.17 9.938e-01 349.00 2008.91 482 533 301 133 173 156 2821 2733 671 247 252 97 0 -2.883
10 -2.658 0.20 5.846e-01 378.00 1861.40 538 5528 10499 160 825 4000 2642 14214 24475 257 2293 10954 0 -2.658
11 -2.206 0.28 9.839e-01 717.00 2581.76 865 954 448 148 191 180 3564 3575 838 256 260 95 0 -2.206
12 -2.327 0.26 9.863e-01 518.00 2028.42 647 677 353 129 177 215 2847 2838 721 248 254 92 0 -2.327
13 -1.435 0.47 9.299e-01 906.00 1911.35 1035 1057 505 129 179 213 2692 2685 435 243 248 93 0 -1.435
14 -1.503 0.45 9.399e-01 1089.00 2408.50 1220 1265 533 131 172 176 3329 3279 593 243 251 96 0 -1.503
15 -1.289 0.52 9.043e-01 1181.00 2251.63 1327 1369 587 146 195 354 3132 3077 552 247 293 975 0 -1.289
16 -1.556 0.44 9.473e-01 1204.00 2762.05 1343 1376 574 139 180 160 3795 3790 573 256 263 98 0 -1.556
17 -1.784 0.37 9.663e-01 895.00 2405.38 1028 1084 544 133 182 174 3337 3300 576 255 276 174 0 -1.784
18 -2.306 0.26 9.874e-01 931.00 3592.46 1072 1119 554 141 178 160 4853 4708 896 250 266 140 0 -2.306
19 -1.695 0.40 9.602e-01 769.00 1942.57 902 942 446 133 187 185 2753 2762 405 264 272 107 0 -1.695
20 -0.980 0.65 8.217e-01 2497.00 3843.77 2635 2690 832 138 188 188 5195 5164 836 270 275 111 0 -0.980

Total number of rows: 25246

Table truncated, full table size 2520 Kbytes.




Supplementary file Size Download File type/resource
GSM171062.gpr.gz 2.3 Mb (ftp)(http) GPR

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