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Sample GSM17226 Query DataSets for GSM17226
Status Public on Oct 26, 2004
Title P810 Cerebellum #1
Sample type SAGE
Anchor NlaIII
Tag Count 18554
Tag Length 10
 
Source name P810 C57BL6/J male mouse cerebellum
Organism Mus musculus
Extracted molecule total RNA
 
Description C57BL6/J male mouse was sacrificed and the cerebellum was quickly removed. Total RNA was isolated using Trizol. For the creation of the library, 40micrograms of total RNA was used. cDNA was synthesized on oligo dT beads.
Enzyme: NlaIII
Vector: pZERO-1
 
Submission date Feb 24, 2004
Last update date Nov 19, 2008
Contact name Magdalena Popesco
E-mail(s) mpopesco@hotmail.com
Phone 614-292-7747
Organization name The Ohio State Universiy
Street address
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platform ID GPL11
Series (1)
GSE1090 Mouse cerebellum

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ATAATACATA 442 23822.36
ATACTGACAT 270 14552.12
AAAAAAAAAA 194 10455.97
GCTGCCCTCC 141 7599.44
GTGGCTCACA 99 5335.78
GTAAGCATAA 60 3233.80
ACCAATGAAC 57 3072.11
TCAGGCTGCC 53 2856.53
CCCTTCTTCT 52 2802.63
CTAGTCTTTG 41 2209.77
GAATAATAAA 40 2155.87
TGGGTTGTCT 40 2155.87
GAAAAAAAAA 38 2048.08
AGCAGTCCCC 37 1994.18
CTGAGGAAGT 37 1994.18
CCTTGCTCAA 36 1940.28
GCACAACTTG 36 1940.28
GCTTCGTCCA 35 1886.39
ATGTCTCAAA 32 1724.70
CCTTTAATCC 32 1724.70

Total number of rows: 10542

Table truncated, full table size 197 Kbytes.




Supplementary data files not provided
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