|
| Status |
Public on Aug 01, 2016 |
| Title |
III-26 polyp3 |
| Sample type |
genomic |
| |
|
| Source name |
Patient III-26- Polyp number 3
|
| Organism |
Homo sapiens |
| Characteristics |
tissue type: fundic gland polyps
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAwas extracted using the QIAamp DNA Micro kit (Qiagen)
|
| Label |
cy3/cy5
|
| Label protocol |
DNA was assayed using Illumina SNP BeadChips as per manufacturer’s instructions (Illumina, San Diego CA) (HumanOmni2.5-8 BeadChips).
|
| |
|
| Hybridization protocol |
As per manufacturer’s instructions (Illumina, San Diego CA)
|
| Scan protocol |
Arrays were scanned on iScan
|
| Data processing |
Data was extracted using Genotyping module (v1.8.4) in Genomestudio v2010.3 (Illumina, San Diego CA) to calculate B-allele frequencies (BAF) and logR values.
|
| |
|
| Submission date |
Sep 29, 2015 |
| Last update date |
Aug 01, 2016 |
| Contact name |
Katia Nones |
| E-mail(s) |
katia.nones@qimrberghofer.edu.au
|
| Phone |
+61 7 3845 3983
|
| Organization name |
QIMR Berghofer MEdical Research Institute
|
| Street address |
300 Herston Road
|
| City |
Brisbane |
| State/province |
QLD |
| ZIP/Postal code |
4029 |
| Country |
Australia |
| |
|
| Platform ID |
GPL18952 |
| Series (1) |
| GSE73547 |
Point mutations in exon 1B of APC reveal gastric adenocarcinoma and proximal polyposis of the stomach as a familial adenomatous polyposis variant |
|
