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Sample GSM1939042 Query DataSets for GSM1939042
Status Public on Feb 22, 2016
Title PA2681_WT_2
Sample type RNA
 
Source name Kras_KDM2B_WT
Organism Mus musculus
Characteristics tissue: bone marrow
genotype/variation: WT
Growth protocol Lineage negative cells were isolated from bone marrow and cultured for 24 hours before isolation of total RNA
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy kit
Label biotin
Label protocol Labeling took place following Affymetrix protocol
 
Hybridization protocol Hybridization was performed using a GeneChip Hybridization Oven 640 overnight at 45°C. Microarray washing and staining was done using a GeneChip Fluidics Station 450
Scan protocol GeneChip Scanner 3000 7G (Affymetrix)
Description wild-type
Data processing Probe level analysis including background subtraction and quantile normalization took placed with the Robust Multi Array Average Algorithm (RMA) using the Affymetrix Expression Console Software 1.3
 
Submission date Nov 12, 2015
Last update date Feb 22, 2016
Contact name Alexandros Tzatsos
E-mail(s) atzatsos@gwu.edu
Phone 2029949104
Organization name George Washington University
Department GW Cancer Center
Lab Cancer Epigenetics Laboratory
Street address 800 22nd St NW SEH 8850
City Washington
State/province DC
ZIP/Postal code 20052
Country USA
 
Platform ID GPL18233
Series (2)
GSE70729 Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies
GSE74960 Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies [Kras background mouse gene expression]

Data table header descriptions
ID_REF
VALUE RMA Signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
17210851 3.1626 0.147447
17210853 3.52643 0.447172
17210854 3.27874 0.348764
17210857 9.50786 0.00111198
17210858 3.8844 0.409996
17210859 11.7864 1.56664e-05
17210860 10.1845 9.03801e-07
17210862 10.9895 1.61125e-05
17210864 9.79485 0.000366121
17210865 10.1753 2.64273e-07
17210867 9.39342 0.00105042
17210868 9.75954 0.000486584
17210870 7.03528 0.126965
17210871 11.9681 1.59873e-05
17210872 6.18919 0.08224
17210873 4.93338 0.377479
17210874 10.8397 1.58641e-05
17210876 10.8636 1.59117e-05
17210877 10.8521 1.61281e-05
17210878 9.79404 0.00104167

Total number of rows: 269751

Table truncated, full table size 7054 Kbytes.




Supplementary file Size Download File type/resource
GSM1939042_2_PA2681.CEL.gz 9.4 Mb (ftp)(http) CEL
GSM1939042_2_PA2681.rma-exon-all-dabg.chp.gz 2.4 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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