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GEO accession:
Sample GSM194376
Query DataSets for GSM194376
Status
Public on Mar 05, 2010
Title
lung_CIS-2
Sample type
SAGE
Anchor
NlaIII
Tag Count
160466
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: squamous cell carcinoma-in-situ
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAATAAAGC
13753
85706.63
CTCCCCCAAG
2864
17848.02
AAGGGAGCAC
2102
13099.35
TACCTGCAGA
1952
12164.57
CTCCCCCAAA
1807
11260.95
ACTTTTTCAA
1654
10307.48
AAACCCCAAT
1272
7926.91
GTTGTGGTTA
984
6132.14
GTGGCCACGG
972
6057.36
AAAAAAAAAA
959
5976.34
ATAATTCTTT
848
5284.61
CTTCCTTGCC
833
5191.13
TAGGTTGTCT
798
4973.02
TTCAATAAAA
755
4705.05
GATCTCTTGG
736
4586.64
TTCATACACC
670
4175.34
CCCATCGTCC
666
4150.41
GTTCACATTA
570
3552.15
AGAAAGATGT
566
3527.23
TCTCCATACC
564
3514.76
Total number of rows:
35705
Table truncated, full table size
642 Kbytes
.
Supplementary data files not provided
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