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GEO accession:
Sample GSM194380
Query DataSets for GSM194380
Status
Public on Mar 05, 2010
Title
lung_SqCC-1
Sample type
SAGE
Anchor
NlaIII
Tag Count
150712
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAATAAAGC
3059
20296.99
CTTCCTTGCC
1755
11644.73
ACTTTTTCAA
1473
9773.61
ATAATTCTTT
1185
7862.68
AAAAAAAAAA
1066
7073.09
TTCAATAAAA
1009
6694.89
GTTGTGGTTA
978
6489.20
TAGGTTGTCT
832
5520.46
AAAGCACAAG
747
4956.47
GAGGGAGTTT
709
4704.34
TACCATCAAT
708
4697.70
TTGGTCCTCT
700
4644.62
TTCATACACC
637
4226.60
GTGAAACCCC
608
4034.18
CCCATCGTCC
593
3934.66
CCACTGCACT
575
3815.22
CAATAAATGT
489
3244.60
GTTCACATTA
477
3164.98
AAGGGAGCAC
477
3164.98
AAACCCCAAT
476
3158.34
Total number of rows:
38485
Table truncated, full table size
691 Kbytes
.
Supplementary data files not provided
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