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GEO accession:
Sample GSM194382
Query DataSets for GSM194382
Status
Public on Mar 05, 2010
Title
lung_SqCC-3
Sample type
SAGE
Anchor
NlaIII
Tag Count
208451
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTTTTTCAA
1913
9177.22
GTTGTGGTTA
1837
8812.62
GTGAAACCCC
1786
8567.96
CCTGTAATCC
1498
7186.34
CCACTGCACT
1376
6601.07
TCTCCATACC
1314
6303.64
GAAATAAAGC
1077
5166.68
CCCATCGTCC
1045
5013.17
GTGAAACCCT
1013
4859.66
CACCTAATTG
997
4782.90
TAGGTTGTCT
994
4768.51
ATAATTCTTT
811
3890.60
TGCCCTCAGG
796
3818.64
TTCATACACC
729
3497.22
CTAAGACTTC
714
3425.27
GTTCACATTA
710
3406.08
TTCAATAAAA
674
3233.37
AGCCCTACAA
585
2806.41
CCTATCAGTA
578
2772.83
TTGGCCAGGC
562
2696.08
Total number of rows:
62569
Table truncated, full table size
1113 Kbytes
.
Supplementary data files not provided
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