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GEO accession:
Sample GSM194386
Query DataSets for GSM194386
Status
Public on Mar 05, 2010
Title
lung_Met
Sample type
SAGE
Anchor
NlaIII
Tag Count
202340
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Metaplastic bronchial epithelium
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTTTTTCAA
2922
14441.04
TACCTGCAGA
2670
13195.61
AAAAAAAAAA
1889
9335.77
TGGAAATGAC
1819
8989.82
GAAATACAGT
1519
7507.17
CCACTGCACT
1454
7185.92
TTTCCTGCTC
1241
6133.24
TTTGGTTTTC
1224
6049.22
CCTGTAATCC
1209
5975.09
GTTGTGGTTA
1204
5950.38
GTGAAACCCC
1153
5698.33
GTTCACATTA
1076
5317.78
AGAAAGATGT
1036
5120.09
CTTCCTTGCC
995
4917.47
TAGGTTGTCT
987
4877.93
GTGGCCACGG
983
4858.16
GATCTCTTGG
918
4536.92
TTGGGGTTTC
759
3751.11
TACCATCAAT
742
3667.09
GTGAAACCCT
700
3459.52
Total number of rows:
48315
Table truncated, full table size
862 Kbytes
.
Supplementary data files not provided
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