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Status
Public on Feb 20, 2016
Title
B39_48hr_1
Sample type
RNA
Source name
hFOB
Organism
Homo sapiens Characteristics
cell line: hFOB
Treatment protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule
total RNA
Extraction protocol
none provided by submitter
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
B39_48hr_1
Data processing
Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
Submission date
Nov 20, 2015
Last update date
Feb 20, 2016
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570 Series (2)
GSE75230 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
348.686
P
5.16732e-05
AFFX-BioB-M_at
492.945
P
4.42873e-05
AFFX-BioB-3_at
329.355
P
4.42873e-05
AFFX-BioC-5_at
832.237
P
5.16732e-05
AFFX-BioC-3_at
1541.96
P
4.42873e-05
AFFX-BioDn-5_at
2227.97
P
4.42873e-05
AFFX-BioDn-3_at
3661.43
P
4.42873e-05
AFFX-CreX-5_at
9912.75
P
5.16732e-05
AFFX-CreX-3_at
10142.3
P
4.42873e-05
AFFX-DapX-5_at
134.18
P
6.02111e-05
AFFX-DapX-M_at
400.299
P
0.000445901
AFFX-DapX-3_at
734.086
P
4.42873e-05
AFFX-LysX-5_at
44.9809
P
0.000340305
AFFX-LysX-M_at
56.9418
P
0.00556451
AFFX-LysX-3_at
100.463
P
7.00668e-05
AFFX-PheX-5_at
60.2931
P
4.42873e-05
AFFX-PheX-M_at
65.3399
P
6.02111e-05
AFFX-PheX-3_at
88.8695
P
5.16732e-05
AFFX-ThrX-5_at
3.82221
A
0.41138
AFFX-ThrX-M_at
65.8725
P
0.000340305
54675 1641 Kbytes .Supplementary file Size Download File type/resource GSM1946421_B39_48hr_1.CEL.gz
4.6 Mb
(ftp) (http) CEL
GSM1946421_B39_48hr_1.mas5.CHP.gz
486.9 Kb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
