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Status
Public on Feb 20, 2016
Title
OIM_24hr_2
Sample type
RNA
Source name
hFOB
Organism
Homo sapiens Characteristics
cell line: hFOB
Treatment protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule
total RNA
Extraction protocol
none provided by submitter
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
OIM_24hr_2
Data processing
Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
Submission date
Nov 20, 2015
Last update date
Feb 20, 2016
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570 Series (2)
GSE75230 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
405.564
P
5.16732e-05
AFFX-BioB-M_at
553.107
P
4.42873e-05
AFFX-BioB-3_at
355.394
P
4.42873e-05
AFFX-BioC-5_at
948.648
P
5.16732e-05
AFFX-BioC-3_at
1663.96
P
4.42873e-05
AFFX-BioDn-5_at
2567.4
P
4.42873e-05
AFFX-BioDn-3_at
3910.99
P
5.16732e-05
AFFX-CreX-5_at
10985.3
P
5.16732e-05
AFFX-CreX-3_at
11536.1
P
4.42873e-05
AFFX-DapX-5_at
166.599
P
7.00668e-05
AFFX-DapX-M_at
572.775
P
0.000258358
AFFX-DapX-3_at
934.141
P
4.42873e-05
AFFX-LysX-5_at
56.0813
P
0.000195116
AFFX-LysX-M_at
85.8008
P
0.000856509
AFFX-LysX-3_at
132.298
P
4.42873e-05
AFFX-PheX-5_at
62.5447
P
4.42873e-05
AFFX-PheX-M_at
107.284
P
8.14279e-05
AFFX-PheX-3_at
112.337
P
5.16732e-05
AFFX-ThrX-5_at
40.1465
P
0.00255552
AFFX-ThrX-M_at
107.527
P
6.02111e-05
54675 1644 Kbytes .Supplementary file Size Download File type/resource GSM1946428_OIM_24hr_2.CEL.gz
4.6 Mb
(ftp) (http) CEL
GSM1946428_OIM_24hr_2.mas5.CHP.gz
486.8 Kb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
