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GEO accession:
Sample GSM194650
Query DataSets for GSM194650
Status
Public on Nov 22, 2008
Title
Oral_normal_biopsy_rep57
Sample type
SAGE
Anchor
NlaIII
Tag Count
178076
Tag Length
10
Source name
Normal oral biopsy
Organism
Homo sapiens
Characteristics
Gender: male
Age: 40
Tisue: normal oral
Collection: biopsy
Extracted molecule
polyA RNA
Extraction protocol
RNA was isolated from cell lysate by guanidium isothiocyanate and phenol/chloroform extraction.
Description
Tissue was collected from a biopsy of the right buccal mucosa.
Data processing
The raw sequence data was converted to SAGE tags and counts using in-house Perl scripts and the Bio-SAGE-DataProcessing-1.20 Perl module from CPAN (
http://search.cpan.org/~scottzed/Bio-SAGE-DataProcessing-1.20
).
Submission date
May 25, 2007
Last update date
Nov 19, 2008
Contact name
Greg Vatcher
E-mail(s)
gvatcher@bccrc.ca
Organization name
BC Cancer Research Centre
Street address
675 West 10th Ave.
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE8127
Normal Oral Transcriptome
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
TTTCCTGCTC
8611
48355.76
TACCTGCAGA
6548
36770.82
AGAAAGATGT
3181
17863.16
GTGGCCACGG
1987
11158.16
ATCCTTGCTG
1784
10018.19
AAAGCACAAG
1732
9726.18
ACTTTTTCAA
1478
8299.83
GTGGAAGACG
1373
7710.19
AAAAAAAAAA
1041
5845.82
TAATTTGCAT
936
5256.18
CCACTGCACT
916
5143.87
TGGGGAGAGG
905
5082.10
GGCTTCTAAC
900
5054.02
GGCAGAGAAG
893
5014.71
AAAATAAACC
858
4818.17
AGCTTCTACC
831
4666.55
GTGAAACCCC
782
4391.38
ATGAGCTGAC
746
4189.22
ATGATCCCTG
723
4060.06
CCTGTAATCC
662
3717.51
Total number of rows:
43398
Table truncated, full table size
778 Kbytes
.
Supplementary data files not provided
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