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GEO accession:
Sample GSM194651
Query DataSets for GSM194651
Status
Public on Nov 22, 2008
Title
Oral_normal_biopsy_rep64
Sample type
SAGE
Anchor
NlaIII
Tag Count
157392
Tag Length
10
Source name
Normal oral biopsy
Organism
Homo sapiens
Characteristics
Gender: female
Age: 24
Tisue: normal oral
Collection: biopsy
Extracted molecule
polyA RNA
Extraction protocol
RNA was isolated from cell lysate by guanidium isothiocyanate and phenol/chloroform extraction.
Description
Tissue was collected from a biopsy of the oral gingiva.
Data processing
The raw sequence data was converted to SAGE tags and counts using in-house Perl scripts and the Bio-SAGE-DataProcessing-1.20 Perl module from CPAN (
http://search.cpan.org/~scottzed/Bio-SAGE-DataProcessing-1.20
).
Submission date
May 25, 2007
Last update date
Nov 19, 2008
Contact name
Greg Vatcher
E-mail(s)
gvatcher@bccrc.ca
Organization name
BC Cancer Research Centre
Street address
675 West 10th Ave.
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE8127
Normal Oral Transcriptome
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTTTTTCAA
3341
21227.25
TACCTGCAGA
2992
19009.86
AAAGCAAAAA
2258
14346.35
GTGAAACCCC
1289
8189.74
CCACTGCACT
1224
7776.76
AGAAAGATGT
1050
6671.24
CCTGTAATCC
1044
6633.12
TTTCCTGCTC
1032
6556.88
CACCTAATTG
997
6334.50
AAAGCAAAGA
996
6328.15
TTCATACACC
926
5883.40
TAATAAAGGT
896
5692.79
CCCATCGTCC
890
5654.67
AAAGCACAAG
836
5311.58
GTGAAACCCT
768
4879.54
CTAAGACTTC
761
4835.06
AAAAAAAAAA
628
3990.04
GCCCCTGCTG
616
3913.79
TTTATTAAAG
604
3837.55
TGATTTCACT
537
3411.86
Total number of rows:
50376
Table truncated, full table size
901 Kbytes
.
Supplementary data files not provided
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