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Status |
Public on Sep 05, 2017 |
Title |
LNCAP treated with 10 nM DHT for 2h, biological rep1 |
Sample type |
RNA |
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|
Source name |
Androgen-sensitive human prostate adenocarcinoma cells
|
Organism |
Homo sapiens |
Characteristics |
treatment: 10 nM DHT (2h)
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Treatment protocol |
LNCaP cell were seeded to 8x105 cell per 10cm dish and starved for 3 days in RPMI Medium 1640-no-phenol red (Gibco) and 5% chracoal stripped FVBS (CSFBS). Then LNCaP cells were treated with or without (vehicle, ETOH) 10nM of DHT for 30mins, 2h, 4h and 16h. Cells were then harvested for RNA extraction
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Growth protocol |
Human LNCaP prostate cancer cells were maintained in RPMI Medium 1640 (Gibco) supplemented with 10% fetal bovine serum (FBS), for at least 72 hrs to 70-80% confluence before seeding for starvation and DHT treatment.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA extraction was performed using Trizol Reagent (invitrogen) following manufacturer's instructions
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol for the Human 2.1ST arrays
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|
|
Hybridization protocol |
As per standard Affymetrix protocol for the Human21.1ST arrays
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Scan protocol |
As per standard Affymetrix protocol for the Human21.1ST arrays
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Description |
DHT time-series gene expression
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Data processing |
Data were processed in R using the rma function in the Oligo package
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Submission date |
Dec 24, 2015 |
Last update date |
Sep 05, 2017 |
Contact name |
Fatima Valdes Mora |
E-mail(s) |
f.valdesmora@garvan.org.au
|
Phone |
+61 2 92958334
|
Organization name |
Garvan Institute of Medical Research
|
Department |
Genomics and Epigenetics
|
Lab |
Histone Variant Group
|
Street address |
384 Victoria Street
|
City |
Darlinghurst |
State/province |
NSW |
ZIP/Postal code |
2010 |
Country |
Australia |
|
|
Platform ID |
GPL17692 |
Series (2) |
GSE76335 |
Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [Microarray expression] |
GSE76337 |
Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer |
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