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Sample GSM203989 Query DataSets for GSM203989
Status Public on Jun 25, 2007
Title TGFBd8_22
Sample type RNA
 
Source name MCF10A
Organism Homo sapiens
Characteristics MCF10A
Extracted molecule total RNA
Extraction protocol RNeasy for cultured cells.
Label biotin
Label protocol Standard Affymetrix High Throughput Array protocol.
 
Hybridization protocol Standard Affymetrix High Throughput Array protocol.
Scan protocol Standard Affymetrix High Throughput Array protocol.
Description TGFbeta harvest d8 022106
Data processing CEL files were processed in a single batch with RMA 2, as implemented in Bioconductor for R version 2.3.0, with default parameters.
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Mary Helen Barcellos-Hoff
E-mail(s) mhbarcellos-hoff@lbl.gov
Phone 510.486.6371
Fax 510.486.5586
URL http://www.lbl.gov/lifesciences/labs/barcellos-hoff_lab.html
Organization name Lawrence Berkeley National Laboratory
Department Life Sciences Division
Lab Barcellos-Hoff
Street address 1 Cyclotron Rd MS977R225A
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Platform ID GPL3921
Series (1)
GSE8240 EMT initiation in MCF10A cells subjected to ionizing radiation and treatment with transforming growth factor beta-1.

Data table header descriptions
ID_REF
VALUE RMA 2 normalized signal

Data table
ID_REF VALUE
1007_s_at 9.92327697578922
1053_at 7.4797139560178
117_at 5.16418864925497
121_at 8.12604293041193
1255_g_at 4.86208167937022
1294_at 5.7702716808854
1316_at 5.1606152338518
1320_at 5.70918685940048
1405_i_at 4.72730365942053
1431_at 4.91916314797674
1438_at 5.69033649317668
1487_at 8.10483431404402
1494_f_at 6.07792142858295
1598_g_at 9.16183426881985
160020_at 7.12977517800824
1729_at 7.4730875807265
1773_at 6.8748930266149
177_at 5.68797974921075
179_at 8.27438069832694
1861_at 8.3135075269922

Total number of rows: 22277

Table truncated, full table size 605 Kbytes.




Supplementary file Size Download File type/resource
GSM203989.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM203989.CHP.gz 120.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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