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Sample GSM2072459 Query DataSets for GSM2072459
Status Public on Mar 18, 2016
Title total RNA-seq from hair follicle dermal papilla cell (ENCLB555ASC)
Sample type SRA
 
Source name Homo sapiens hair follicle dermal papilla primary cell female adult (70 years)
Organism Homo sapiens
Characteristics cell_type: hair follicle dermal papilla cell
biomaterial_type: primary cell
description: Follicle Dermal Papilla Cells (HFDPC) from the lateral scalp region of a 70 year old caucasian female with blond hair
biosample encode accession: ENCBS455ENC (SAMN04284369)
age: 70 year
donor_id: ENCDO130AAA
dev stage: adult
passage number: 2
Sex: female
health state: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV
lab: Thomas Gingeras, CSHL
link: ENCBS455ENC at ENCODE; https://www.encodeproject.org/ENCBS455ENC/
link: Derived from ENCODE donor ENCDO130AAA; https://www.encodeproject.org/ENCDO130AAA/
link: certificate of analysis; https://www.encodeproject.org/documents/7ec5a37f-397d-4fb4-820e-480845eb14ad/@@download/attachment/HFDPC0102703.3_Gingeras_protocol.pdf
link: ENCODE dbxrefs HFDPC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC
link: ENCODE dbxrefs HFDPC_0102703.3; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC_0102703.3
link: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/follicle-dermal-papilla-cells/?sword_list%5B%5D=HFDPC
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/93d71461-68df-41ee-9922-865a9316b120/@@download/attachment/LID47094.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR000CUB/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from hair follicle dermal papilla primary whole cells, HFDPC isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ASC
size range: >200
spikeins used: /references/ENCSR470JZL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE78606 total RNA-seq from hair follicle dermal papilla cell (ENCSR000CUB)
Relations
SRA SRX1603501
BioSample SAMN04284369
Named Annotation GSM2072459_ENCFF872IGP_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072459_ENCFF105GIM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072459_ENCFF468GQI_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072459_ENCFF656JLG_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2072459_ENCFF050NQH_plus_strand_signal_of_all_reads_hg19.bigWig 202.3 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF105GIM_minus_strand_signal_of_all_reads_GRCh38.bigWig 198.6 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF218CZN_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072459_ENCFF280MKJ_minus_strand_signal_of_all_reads_hg19.bigWig 184.6 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF297XXS_minus_strand_signal_of_all_reads_hg19.bigWig 196.6 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF358INH_minus_strand_signal_of_unique_reads_hg19.bigWig 175.4 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF468GQI_plus_strand_signal_of_unique_reads_GRCh38.bigWig 192.0 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF495BUA_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2072459_ENCFF573SOS_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2072459_ENCFF656JLG_minus_strand_signal_of_unique_reads_GRCh38.bigWig 185.4 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF724BKX_plus_strand_signal_of_unique_reads_hg19.bigWig 192.7 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF870WYK_plus_strand_signal_of_unique_reads_hg19.bigWig 178.9 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF872IGP_plus_strand_signal_of_all_reads_GRCh38.bigWig 204.0 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF875QPB_minus_strand_signal_of_unique_reads_hg19.bigWig 186.0 Mb (ftp)(http) BIGWIG
GSM2072459_ENCFF923FYN_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2072459_ENCFF951GHA_plus_strand_signal_of_all_reads_hg19.bigWig 187.2 Mb (ftp)(http) BIGWIG
GSM2072459_ENCLB555ASC_README.txt.gz 2.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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