|
Status |
Public on Nov 23, 2020 |
Title |
t(14;18) neg Follicular Lymphoma 6 |
Sample type |
genomic |
|
|
Source name |
t(14;18) neg Follicular Lymphoma 6
|
Organism |
Homo sapiens |
Characteristics |
lymph node: axillary LN type of sample: t(14;18)-neg/BCL2-neg FL gender: female tissue: FFPE
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA from formalin-fixed paraffin-embedded (FFPE) tissue was extracted after dewaxing and proteinase K digestion applying standard phenol/chloroform purification procedures
|
Label |
Biotin
|
Label protocol |
Affymetrix OncoScan™ FFPE Assay kit /GPL18602
|
|
|
Hybridization protocol |
Affymetrix OncoScan™ FFPE Assay kit /GPL18602
|
Scan protocol |
Affymetrix® GeneChip® Scanner 3000G to detect target bound to Oncoscan array after staining with Biotin.
|
Description |
FL6 Hybridized to Affymetrix OncoScan FFPE Assay
|
Data processing |
Nexus biodiscovery software Gains and losses were evaluated with visual inspection by 2 different observers using Nexus Biodiscovery software (Biodiscovery, Hawthorne CA, USA). The CNAs with a minimum size of 100kb were considered real. Loss of heterozigosity regions where considered when size was >5Mb.
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|
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Submission date |
Apr 10, 2016 |
Last update date |
Nov 23, 2020 |
Contact name |
Itziar Salaverria |
E-mail(s) |
isalaver@clinic.cat
|
Organization name |
Hospital Clínic
|
Street address |
Rossello 153
|
City |
Barcelona |
ZIP/Postal code |
08036 |
Country |
Spain |
|
|
Platform ID |
GPL21558 |
Series (1) |
GSE80103 |
Genome-wide analysis of t(14;18)-negative/BCL2 expression-negative FL |
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