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Sample GSM2138752

Query DataSets for GSM2138752

Status

Public on May 26, 2016

Title

WGBS from skeletal muscle myoblast (ENCLB587BLQ)

Sample type

SRA

Source name

Homo sapiens skeletal muscle myoblast primary cell

Organism

Homo sapiens

Characteristics

cell_type: skeletal muscle myoblast
biomaterial_type: primary cell
biosample encode accession: ENCBS665DRD (SAMN04284467)
age: unknown
donor_id: ENCDO094AAA
dev stage: unknown
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS665DRD at ENCODE; https://www.encodeproject.org/ENCBS665DRD/
link: Derived from ENCODE donor ENCDO094AAA; https://www.encodeproject.org/ENCDO094AAA/

Extracted molecule

genomic DNA

Extraction protocol

growth protocol: https://www.encodeproject.org/documents/6e461240-5af7-462c-843f-3dae804f957a/@@download/attachment/HAIB_Myers_WGBSprotocol_2014-10-30.pdf

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

RANDOM

Instrument model

HiSeq X Ten

Description

https://www.encodeproject.org/experiments/ENCSR328TBS/
***************
biological replicate number: 2
technical replicate number: 1
description: HAIB Whole Genome Bisulfite Sequencing HSMM
experiment encode accession: ENCSR328TBS
assay title: WGBS
assembly: GRCh38
encode release date: 2016-03-22
lab: Richard Myers, HAIB
library encode accession: ENCLB587BLQ

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Apr 29, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20795

Series (1)

GSE80877

WGBS from skeletal muscle myoblast (ENCSR328TBS)

Relations

BioSample

SAMN04284467

SRA

SRX1737932

Named Annotation

GSM2138752_ENCFF283VIL_signal_GRCh38.bigWig

Named Annotation

GSM2138752_ENCFF408YLC_methylation_state_at_CHH_GRCh38.bed.gz

Named Annotation

GSM2138752_ENCFF718CZQ_methylation_state_at_CHG_GRCh38.bed.gz

Named Annotation

GSM2138752_ENCFF774GXJ_methylation_state_at_CpG_GRCh38.bed.gz

Supplementary file	Size	Download	File type/resource
GSM2138752_ENCFF040LAJ_methylation_state_at_CpG_GRCh38.bigBed	1.2 Gb	(ftp)(http)	BIGBED
GSM2138752_ENCFF283VIL_signal_GRCh38.bigWig	7.6 Gb	(ftp)(http)	BIGWIG
GSM2138752_ENCFF351NIS_methylation_state_at_CHG_GRCh38.bigBed	4.3 Gb	(ftp)(http)	BIGBED
GSM2138752_ENCFF408YLC_methylation_state_at_CHH_GRCh38.bed.gz	7.9 Gb	(ftp)(http)	BED
GSM2138752_ENCFF718CZQ_methylation_state_at_CHG_GRCh38.bed.gz	2.5 Gb	(ftp)(http)	BED
GSM2138752_ENCFF774GXJ_methylation_state_at_CpG_GRCh38.bed.gz	634.8 Mb	(ftp)(http)	BED
GSM2138752_ENCFF891URW_methylation_state_at_CHH_GRCh38.bigBed	10.8 Gb	(ftp)(http)	BIGBED
GSM2138752_ENCLB587BLQ_README.txt.gz	798 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file