|
Status |
Public on Jul 04, 2016 |
Title |
pES2 |
Sample type |
SRA |
|
|
Source name |
pES2 Human embryonic stem cells
|
Organism |
Homo sapiens |
Characteristics |
differentiation status: Undifferentiated karyotype: Parthenogenetic
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Total RNA was extracted using NucleoSpin RNA Plus kit (Marcherey-Nagel). mRNA was enriched by Poly-A selection. Sequencing libraries were prepared using TruSeq RNA Library Prep Kit v2 (Illumina).
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
Reads were mapped to the human reference genome (GRCh38/hg38) using TopHat (version 2.0.8b) Reads per kilobase of transcript per million mapped reads (FPKM) values were calculated using Cufflinks (version 2.1.1) Genome_build: USCS/GRCh38/hg38 Supplementary_files_format_and_content: Tab-delimited text file includes FPKM values for each sample
|
|
|
Submission date |
May 13, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Uri Weissbein |
E-mail(s) |
uriwsbn@gmail.com
|
Organization name |
Hebrew University of Jerusalem
|
Department |
Genetics
|
Lab |
Nissim Benvenisty Lab
|
Street address |
Haalon 4
|
City |
Pardess hana |
State/province |
Please Select |
ZIP/Postal code |
37023 |
Country |
Israel |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE81402 |
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq |
|
Relations |
BioSample |
SAMN04994876 |
SRA |
SRX1759177 |