GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22328
Query DataSets for GSM22328
Status
Public on Oct 12, 2004
Title
Rat EOm- R2GL2.1
Sample type
RNA
Source name
Adult rat extraocular muscle global layer microdissected using laser
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
T7 based amplification of mRNA using RiboAmp OA RNA Amplification kit followed by the affymetrix standard protocol and run on ratRAE230A array set.
http://www.med.upenn.edu/cellbio/faculty/rubinstein/
http://www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm
Keywords = Extraocular muscle
Keywords = Global layer
Keywords = Orbital layer
Keywords = Microarray
Keywords = Laser Capture microscopy
Submission date
May 06, 2004
Last update date
May 27, 2005
Contact name
Murat T Budak
E-mail(s)
mtbudak@mail.med.upenn.edu
Phone
215-8989726
Organization name
University of Pennsylvania
Department
Lab
Rubinstein and Khurana Labs
Street address
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL341
Series (1)
GSE1374
Laminar gene expression of rat extraocular orbital and global layers
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Detection p-value
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
Detection p-value
AFFX-BioB-5_at
202.9
P
0.002023
AFFX-BioB-M_at
309.4
P
0.000052
AFFX-BioB-3_at
147.4
P
0.000147
AFFX-BioC-5_at
490.3
P
0.00006
AFFX-BioC-3_at
368
P
0.000044
AFFX-BioDn-5_at
493.5
P
0.000297
AFFX-BioDn-3_at
2028.4
P
0.000052
AFFX-CreX-5_at
6052.5
P
0.000044
AFFX-CreX-3_at
5621.4
P
0.000044
AFFX-DapX-5_at
8
A
0.425962
AFFX-DapX-M_at
8.9
A
0.354453
AFFX-DapX-3_at
2.6
A
0.966323
AFFX-LysX-5_at
0.7
A
0.976071
AFFX-LysX-M_at
10.2
A
0.574038
AFFX-LysX-3_at
4.4
A
0.544587
AFFX-PheX-5_at
1.5
A
0.916408
AFFX-PheX-M_at
0.6
A
0.984817
AFFX-PheX-3_at
5
A
0.699394
AFFX-ThrX-5_at
1.2
A
0.996788
AFFX-ThrX-M_at
8.2
A
0.51489
Total number of rows:
15923
Table truncated, full table size
420 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
