NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2308512 Query DataSets for GSM2308512
Status Public on Oct 14, 2016
Title WGBS from fibroblast of arm (ENCLB091KWS)
Sample type SRA
 
Source name Homo sapiens fibroblast of arm primary cell male adult (53 years)
Organism Homo sapiens
Characteristics cell_type: fibroblast of arm
biomaterial_type: primary cell
description: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS367AAA (SAMN04284355)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/
link: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183
link: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166
Extracted molecule genomic DNA
Extraction protocol growth protocol: https://www.encodeproject.org/documents/6e461240-5af7-462c-843f-3dae804f957a/@@download/attachment/HAIB_Myers_WGBSprotocol_2014-10-30.pdf
 
Library strategy Bisulfite-Seq
Library source genomic
Library selection RANDOM
Instrument model HiSeq X Ten
 
Description https://www.encodeproject.org/experiments/ENCSR440MLE/
***************
biological replicate number: 1
technical replicate number: 1
description: HAIB Whole Genome Bisulfite Sequencing Fibroblast of Arm
experiment encode accession: ENCSR440MLE
assay title: WGBS
assembly: GRCh38
encode release date: 2015-10-13
lab: Richard Myers, HAIB
library encode accession: ENCLB091KWS
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20795
Series (1)
GSE86707 WGBS from fibroblast of arm (ENCSR440MLE)
Relations
BioSample SAMN04284355
SRA SRX2156919
Named Annotation GSM2308512_ENCFF390POK_signal_GRCh38.bigWig
Named Annotation GSM2308512_ENCFF986WDE_methylation_state_at_CHH_GRCh38.bed.gz
Named Annotation GSM2308512_ENCFF834NXR_methylation_state_at_CHG_GRCh38.bed.gz
Named Annotation GSM2308512_ENCFF714SUO_methylation_state_at_CpG_GRCh38.bed.gz

Supplementary file Size Download File type/resource
GSM2308512_ENCFF035QQQ_methylation_state_at_CpG_GRCh38.bigBed 1.2 Gb (ftp)(http) BIGBED
GSM2308512_ENCFF341VDH_methylation_state_at_CHH_GRCh38.bigBed 10.9 Gb (ftp)(http) BIGBED
GSM2308512_ENCFF390POK_signal_GRCh38.bigWig 7.1 Gb (ftp)(http) BIGWIG
GSM2308512_ENCFF714SUO_methylation_state_at_CpG_GRCh38.bed.gz 635.0 Mb (ftp)(http) BED
GSM2308512_ENCFF813YEM_methylation_state_at_CHG_GRCh38.bigBed 4.3 Gb (ftp)(http) BIGBED
GSM2308512_ENCFF834NXR_methylation_state_at_CHG_GRCh38.bed.gz 2.5 Gb (ftp)(http) BED
GSM2308512_ENCFF986WDE_methylation_state_at_CHH_GRCh38.bed.gz 3.8 Gb (ftp)(http) BED
GSM2308512_ENCLB091KWS_README.txt.gz 796 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap