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GEO accession:
Sample GSM238882
Query DataSets for GSM238882
Status
Public on Jan 29, 2008
Title
ctr_brain-ctr 278c
Sample type
RNA
Source name
brain sample, non diseased
Organism
Homo sapiens
Characteristics
control brain
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
Label
biotin
Label protocol
labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
Hybridization protocol
microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
Scan protocol
Genechip scanner 3000 7G
Description
examination of differentially regulated splice variants and novel exons in glial brain tumors
Data processing
GCOS, data extraction in ExACT. Plier data is provided in sample table.
Submission date
Oct 19, 2007
Last update date
Aug 14, 2011
Contact name
Pim French
E-mail(s)
p.french@erasmusmc.nl
Phone
+31 10 70443 33
Organization name
Erasmus MC
Department
Neurology
Lab
Neurooncology
Street address
Dr Molewaterplein 50
City
Rotterdam
ZIP/Postal code
2040CA
Country
Netherlands
Platform ID
GPL5188
Series (1)
GSE9385
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
Data table header descriptions
ID_REF
VALUE
plier data
Data table
ID_REF
VALUE
2590411
16
2609210
5
2616957
65
2391254
21
3499280
1
2807653
7
2532280
56
3842613
16
3871433
76
3087946
23
3234450
2
3452435
26
2580386
15
3949778
114
2689727
22
2846401
68
2385421
26
2992747
18
3432063
32
2827457
30
Total number of rows:
1411354
Table truncated, full table size
14976 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238882.CEL.gz
21.7 Mb
(ftp)
(http)
CEL
Processed data provided as supplementary file
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