GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM238890
Query DataSets for GSM238890
Status
Public on Jan 29, 2008
Title
Glioblastoma-Gbm 157
Sample type
RNA
Source name
glioma
Organism
Homo sapiens
Characteristics
ampl EGFR
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
Label
biotin
Label protocol
labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
Hybridization protocol
microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
Scan protocol
Genechip scanner 3000 7G
Description
examination of differentially regulated splice variants and novel exons in glial brain tumors
Data processing
GCOS, data extraction in ExACT. Plier data is provided in sample table.
Submission date
Oct 19, 2007
Last update date
Aug 14, 2011
Contact name
Pim French
E-mail(s)
p.french@erasmusmc.nl
Phone
+31 10 70443 33
Organization name
Erasmus MC
Department
Neurology
Lab
Neurooncology
Street address
Dr Molewaterplein 50
City
Rotterdam
ZIP/Postal code
2040CA
Country
Netherlands
Platform ID
GPL5188
Series (1)
GSE9385
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
Data table header descriptions
ID_REF
VALUE
plier data
Data table
ID_REF
VALUE
2590411
7
2609210
17
2616957
58
2391254
27
3499280
0
2807653
7
2532280
38
3842613
11
3871433
42
3087946
22
3234450
4
3452435
33
2580386
0
3949778
382
2689727
14
2846401
64
2385421
11
2992747
0
3432063
70
2827457
10
Total number of rows:
1411354
Table truncated, full table size
14863 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238890.CEL.gz
21.2 Mb
(ftp)
(http)
CEL
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|