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GEO accession:
Sample GSM238900
Query DataSets for GSM238900
Status
Public on Jan 29, 2008
Title
Glioblastoma-Gbm 240
Sample type
RNA
Source name
glioma
Organism
Homo sapiens
Characteristics
female, 57y
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
Label
biotin
Label protocol
labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
Hybridization protocol
microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
Scan protocol
Genechip scanner 3000 7G
Description
examination of differentially regulated splice variants and novel exons in glial brain tumors
Data processing
GCOS, data extraction in ExACT. Plier data is provided in sample table.
Submission date
Oct 19, 2007
Last update date
Aug 14, 2011
Contact name
Pim French
E-mail(s)
p.french@erasmusmc.nl
Phone
+31 10 70443 33
Organization name
Erasmus MC
Department
Neurology
Lab
Neurooncology
Street address
Dr Molewaterplein 50
City
Rotterdam
ZIP/Postal code
2040CA
Country
Netherlands
Platform ID
GPL5188
Series (1)
GSE9385
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
Data table header descriptions
ID_REF
VALUE
plier data
Data table
ID_REF
VALUE
2590411
18
2609210
14
2616957
70
2391254
14
3499280
0
2807653
0
2532280
32
3842613
21
3871433
44
3087946
18
3234450
3
3452435
71
2580386
29
3949778
203
2689727
26
2846401
71
2385421
19
2992747
14
3432063
64
2827457
43
Total number of rows:
1411354
Table truncated, full table size
14958 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238900.CEL.gz
21.5 Mb
(ftp)
(http)
CEL
Processed data provided as supplementary file
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