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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jan 29, 2008 |
Title |
Oligodendroglioma-OD 40b |
Sample type |
RNA |
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Source name |
glioma
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Organism |
Homo sapiens |
Characteristics |
male, 45y, LOH 1p 19q
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
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Label |
biotin
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Label protocol |
labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
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Hybridization protocol |
microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
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Scan protocol |
Genechip scanner 3000 7G
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Description |
examination of differentially regulated splice variants and novel exons in glial brain tumors
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Data processing |
GCOS, data extraction in ExACT. Plier data is provided in sample table.
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Submission date |
Oct 19, 2007 |
Last update date |
Aug 14, 2011 |
Contact name |
Pim French |
E-mail(s) |
p.french@erasmusmc.nl
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Phone |
+31 10 70443 33
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Organization name |
Erasmus MC
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Department |
Neurology
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Lab |
Neurooncology
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Street address |
Dr Molewaterplein 50
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City |
Rotterdam |
ZIP/Postal code |
2040CA |
Country |
Netherlands |
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Platform ID |
GPL5188 |
Series (1) |
GSE9385 |
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays |
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Data table header descriptions |
ID_REF |
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VALUE |
plier data |
Data table |
ID_REF |
VALUE |
2590411 |
15 |
2609210 |
17 |
2616957 |
55 |
2391254 |
18 |
3499280 |
4 |
2807653 |
0 |
2532280 |
34 |
3842613 |
31 |
3871433 |
60 |
3087946 |
9 |
3234450 |
2 |
3452435 |
35 |
2580386 |
8 |
3949778 |
207 |
2689727 |
37 |
2846401 |
71 |
2385421 |
26 |
2992747 |
24 |
3432063 |
86 |
2827457 |
30 |
Total number of rows: 1411354
Table truncated, full table size 14976 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM238929.CEL.gz |
22.3 Mb |
(ftp)(http) |
CEL |
Processed data provided as supplementary file |
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