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Sample GSM252729 Query DataSets for GSM252729
Status Public on Dec 04, 2008
Title Mutant euthyroid MN_3
Sample type RNA
 
Source name Mutant euthyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP-AlbuminCre; standard chow (Harlan Teklad F6 Rodent Diet 8664)
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) Martin.Bilban@meduniwien.ac.at
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.96041
10338002 6.682079
10338003 10.49218
10338004 9.385074
10338005 1.632018
10338006 1.858921
10338007 2.141422
10338008 3.175856
10338009 9.204556
10338010 1.662627
10338011 5.742007
10338012 1.748999
10338013 1.590894
10338014 1.661174
10338015 1.56448
10338016 8.129708
10338017 12.82422
10338018 7.11885
10338019 5.054211
10338020 9.130181

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252729.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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