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Sample GSM252730 Query DataSets for GSM252730
Status Public on Dec 04, 2008
Title Mutant euthyroid MN_4
Sample type RNA
 
Source name Mutant euthyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP-AlbuminCre; standard chow (Harlan Teklad F6 Rodent Diet 8664)
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) Martin.Bilban@meduniwien.ac.at
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.85258
10338002 6.945396
10338003 10.3723
10338004 9.137279
10338005 1.631046
10338006 1.924241
10338007 2.326364
10338008 3.41328
10338009 9.162339
10338010 1.697388
10338011 6.066942
10338012 1.749004
10338013 1.590927
10338014 1.624921
10338015 1.576495
10338016 8.328627
10338017 12.63482
10338018 7.355381
10338019 5.304417
10338020 9.169409

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252730.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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