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Status |
Public on Feb 14, 2018 |
Title |
C025-A |
Sample type |
RNA |
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|
Source name |
C025 melanoma cell line
|
Organism |
Homo sapiens |
Characteristics |
cell line: C025 cell type: melanoma dot1l genotype: mutant treatment: DMSO vehicle
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Treatment protocol |
C021 cells (DOT1L wild type) were treated with DMSO or the DOT1L inhibitor EPZ-5676 (5 µM), and C025 melanoma cells (DOT1L mutant) were treated with DMSO. After 48 hours of treatment the cells were exposed to UVB (100J/m2), and 3 hours later RNA was extracted from the cells.
|
Growth protocol |
Cells were grown in Medium 254 (Thermo Fisher M-254-500) with the addition of Human Melanocyte Growth Supplement (HMGS).
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using the QIAgen RNeasy Mini Kit according to the manufacturer's protocol.
|
Label |
biotin
|
Label protocol |
Biotin labeling was performed using the WT Plus reagent kit (Affymetrix, Santa Clara, CA) according to the manufacturer's protocol.
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Hybridization protocol |
The labeled, fragmented DNA was hybridized to the Affymetrix Human Gene 2.0 ST Array for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm). The hybridized samples were washed and stained using an Affymetrix fluidics station 450.
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Scan protocol |
After staining, microarrays were immediately scanned using an Affymetrix GeneArray Scanner 3000 7G Plus.
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Description |
Gene expression data from C025 cells treated with DMSO vehicle.
|
Data processing |
Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1), using R version 2.15.1 and the Brainarray hugene20sthsentrezg R package (version 17.0.0).
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Submission date |
Aug 24, 2017 |
Last update date |
Jun 25, 2019 |
Contact name |
Boston University Microarray and Sequencing Resource |
E-mail(s) |
msrdata@bu.edu
|
Organization name |
Boston University
|
Department |
Microarray and Sequencing Resource
|
Street address |
72 East Concord Street, E631
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02118 |
Country |
USA |
|
|
Platform ID |
GPL17930 |
Series (2) |
GSE103079 |
Profiling of expression data in melanoma cells with mutant DOT1L or treated with DOT1L inhibitor |
GSE103081 |
Profiling of expression data in melanoma cells with mutant DOT1L, DOT1L inhibitor or shRNA knockdown |
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