|
Status |
Public on Mar 19, 2018 |
Title |
4x0328-14 |
Sample type |
SRA |
|
|
Source name |
PBMC
|
Organism |
Pan troglodytes |
Characteristics |
cell type: PBMC animal id: 4x0328 infection: HBV day: 14 time: 0hr
|
Extracted molecule |
total RNA |
Extraction protocol |
On-column DNase I treatment was performed during RNA isolation with the RNeasy Mini Kit (Qiagen). cDNA libraries were constructed using a TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA).
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
processed data file column header: H36945/4x0328-14_L1.D711
|
Data processing |
Clipping adapters and low-quality bases. STAR RSEM edgeR limma Genome_build: hg19 Supplementary_files_format_and_content: Tab-delimited text file with raw gene level counts from RSEM output
|
|
|
Submission date |
Oct 17, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Li Li |
E-mail(s) |
li.li@gilead.com
|
Organization name |
Gilead Sciences
|
Street address |
333 Lakeside Drive
|
City |
Foster City |
ZIP/Postal code |
94404 |
Country |
USA |
|
|
Platform ID |
GPL16809 |
Series (1) |
GSE105073 |
Intrahepatic Aggregates of CD8+ T cell and B Cells are Associated with the Antiviral Response to Toll-Like Receptor 7 Agonist GS-9620 |
|
Relations |
BioSample |
SAMN07795321 |
SRA |
SRX3291855 |