|
| Status |
Public on Mar 19, 2018 |
| Title |
4x0506-16 |
| Sample type |
SRA |
| |
|
| Source name |
PBMC
|
| Organism |
Pan troglodytes |
| Characteristics |
cell type: PBMC
animal id: 4x0506
infection: HBV
day: 25
time: 0hr
|
| Extracted molecule |
total RNA |
| Extraction protocol |
On-column DNase I treatment was performed during RNA isolation with the RNeasy Mini Kit (Qiagen).
cDNA libraries were constructed using a TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
processed data file column header: H36947/4x0506-16_L1.D706
|
| Data processing |
Clipping adapters and low-quality bases.
STAR
RSEM
edgeR
limma
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text file with raw gene level counts from RSEM output
|
| |
|
| Submission date |
Oct 17, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Li Li |
| E-mail(s) |
li.li@gilead.com
|
| Organization name |
Gilead Sciences
|
| Street address |
333 Lakeside Drive
|
| City |
Foster City |
| ZIP/Postal code |
94404 |
| Country |
USA |
| |
|
| Platform ID |
GPL16809 |
| Series (1) |
| GSE105073 |
Intrahepatic Aggregates of CD8+ T cell and B Cells are Associated with the Antiviral Response to Toll-Like Receptor 7 Agonist GS-9620 |
|
| Relations |
| BioSample |
SAMN07795354 |
| SRA |
SRX3291881 |
