|
| Status |
Public on Nov 01, 2018 |
| Title |
NaHCO3rep1 |
| Sample type |
SRA |
| |
|
| Source name |
Bacteria
|
| Organism |
Escherichia coli |
| Characteristics |
culture: Exposed to NaHCO3
|
| Extracted molecule |
total RNA |
| Extraction protocol |
At the end of the incubation period, cultures were transferred to ice and bacterial cells were collected at 4°C by centrifugation at 10,000 x g for a 10 min period. The collected cells were then subjected to RNA extraction.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
OtB1790
|
| Data processing |
none provided by the submitter
Genome_build: NC_011601.1
Supplementary_files_format_and_content: raw counts and RPKM
|
| |
|
| Submission date |
Feb 12, 2018 |
| Last update date |
Nov 01, 2018 |
| Contact name |
Joaquin Sanchez |
| E-mail(s) |
joaquinsanchez5@gmail.com
|
| Organization name |
Universidad Autónoma del Estado de Morelos
|
| Department |
Facultad de Medicina
|
| Lab |
Microbiología Molecular
|
| Street address |
Calle Ixtaccihuatl Esq Leñeros
|
| City |
Cuernavaca |
| State/province |
Morelos |
| ZIP/Postal code |
62350 |
| Country |
Mexico |
| |
|
| Platform ID |
GPL14548 |
| Series (1) |
| GSE110493 |
The antibiotics potentiator bicarbonate causes upregulation of tryptophanase and iron acquisition proteins in Escherichia coli |
|
| Relations |
| BioSample |
SAMN08519134 |
| SRA |
SRX3683647 |
